IL_9YPZ_094

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|2589
9YPZ|1|5|G|2590
9YPZ|1|5|A|2591
9YPZ|1|5|U|2592
9YPZ|1|5|C|2593
*
9YPZ|1|5|G|2752
9YPZ|1|5|G|2753
9YPZ|1|5|G|2754
9YPZ|1|5|A|2755
9YPZ|1|5|G|2756

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain Z

60S ribosomal protein L27

Chain g

Large ribosomal subunit protein eL34