IL_9YPZ_110

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9YPZ|1|5|A|3663, 9YPZ|1|5|U|3679, 9YPZ|1|5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|3660
9YPZ|1|5|G|3661
9YPZ|1|5|A|3662
9YPZ|1|5|A|3663
9YPZ|1|5|G|3664
9YPZ|1|5|G|3665
*
9YPZ|1|5|U|3677
9YPZ|1|5|G|3678
9YPZ|1|5|U|3679
9YPZ|1|5|U|3680
9YPZ|1|5|G|3681
9YPZ|1|5|A|3682
9YPZ|1|5|C|3683
9YPZ|1|5|G|3684

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain p

eL43