IL_9YPZ_117

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9YPZ|1|5|A|3785, 9YPZ|1|5|C|3791, 9YPZ|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|C|3781
9YPZ|1|5|C|3782
9YPZ|1|5|A|3783
9YPZ|1|5|A|3784
9YPZ|1|5|A|3785
9YPZ|1|5|U|3786
9YPZ|1|5|G|3787
9YPZ|1|5|C|3788
9YPZ|1|5|C|3789
9YPZ|1|5|U|3790
9YPZ|1|5|C|3791
9YPZ|1|5|G|3792
*
9YPZ|1|5|C|3808
9YPZ|1|5|G|3809
9YPZ|1|5|C|3810
9YPZ|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41