IL_9YPZ_208

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

9YPZ|1|9|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|9|A|599
9YPZ|1|9|G|600
9YPZ|1|9|G|601
9YPZ|1|9|G|602
9YPZ|1|9|C|603
9YPZ|1|9|A|604
9YPZ|1|9|A|605
9YPZ|1|9|G|606
9YPZ|1|9|U|607
9YPZ|1|9|C|608
*
9YPZ|1|9|G|635
9YPZ|1|9|C|636
9YPZ|1|9|U|637

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

Small ribosomal subunit protein uS5

Chain DD

Ribosomal protein S3

Chain JJ

Ribosomal protein S9 (Predicted)

Chain ee

40S ribosomal protein S30