IL_9YPZ_254

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPZ_254 not in the Motif Atlas

Geometric match to IL_8GLP_270

Geometric discrepancy: 0.0967

The information below is about IL_8GLP_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9YPZ|1|9|A|1537
9YPZ|1|9|C|1538
9YPZ|1|9|U|1539
*
9YPZ|1|9|A|1594
9YPZ|1|9|U|1595
9YPZ|1|9|U|1596

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25