IL_9YPZ_256

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9YPZ|1|9|A|1580, 9YPZ|1|9|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|9|G|1550
9YPZ|1|9|U|1551
9YPZ|1|9|G|1552
9YPZ|1|9|C|1553
9YPZ|1|9|C|1554
9YPZ|1|9|U|1555
9YPZ|1|9|A|1556
9YPZ|1|9|C|1557
9YPZ|1|9|C|1558
*
9YPZ|1|9|G|1577
9YPZ|1|9|U|1578
9YPZ|1|9|A|1579
9YPZ|1|9|A|1580
9YPZ|1|9|C|1581
9YPZ|1|9|C|1582

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S3

Chain KK

S10_plectin domain-containing protein

Chain UU

uS10

Chain dd

eS29