IL_9YQ0_017

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9YQ0|1|5|G|409, 9YQ0|1|5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ0|1|5|G|387
9YQ0|1|5|A|388
9YQ0|1|5|A|389
9YQ0|1|5|C|390
*
9YQ0|1|5|G|401
9YQ0|1|5|A|402
9YQ0|1|5|G|403
9YQ0|1|5|U|404
9YQ0|1|5|U|405
9YQ0|1|5|C|406
9YQ0|1|5|A|407
9YQ0|1|5|A|408
9YQ0|1|5|G|409
9YQ0|1|5|A|410
9YQ0|1|5|G|411
9YQ0|1|5|G|412
9YQ0|1|5|G|413
9YQ0|1|5|C|414

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL22

Chain Y

uL24

Chain l

eL39