IL_9YQ0_018
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YQ0_018 not in the Motif Atlas
- Homologous match to IL_8GLP_021
- Geometric discrepancy: 0.0519
- The information below is about IL_8GLP_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9YQ0|1|5|G|415
9YQ0|1|5|U|416
9YQ0|1|5|G|417
9YQ0|1|5|A|418
9YQ0|1|5|A|419
9YQ0|1|5|A|420
9YQ0|1|5|C|421
*
9YQ0|1|8|G|13
9YQ0|1|8|U|14
9YQ0|1|8|G|15
9YQ0|1|8|G|16
9YQ0|1|8|A|17
9YQ0|1|8|U|18
9YQ0|1|8|C|19
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- Large ribosomal subunit protein uL22
- Chain e
- Ribosomal protein L32
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