IL_9YQ0_024

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

9YQ0|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_024 not in the Motif Atlas

Geometric match to IL_7PMM_001

Geometric discrepancy: 0.3414

The information below is about IL_7PMM_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9YQ0|1|5|G|481
9YQ0|1|5|C|481|||A
9YQ0|1|5|G|482
*
9YQ0|1|5|C|672
9YQ0|1|5|C|673

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28