IL_9YQ0_077

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

9YQ0|1|5|C|1935, 9YQ0|1|5|A|2041, 9YQ0|1|5|U|2044, 9YQ0|1|5|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_077 not in the Motif Atlas

Homologous match to IL_8GLP_080

Geometric discrepancy: 0.0813

The information below is about IL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9YQ0|1|5|G|1933
9YQ0|1|5|A|1934
9YQ0|1|5|C|1935
9YQ0|1|5|C|1936
9YQ0|1|5|C|1937
9YQ0|1|5|C|1938
9YQ0|1|5|A|1939
9YQ0|1|5|G|1940
9YQ0|1|5|A|1941
9YQ0|1|5|A|1942
9YQ0|1|5|A|1943
9YQ0|1|5|A|1944
*
9YQ0|1|5|U|2038
9YQ0|1|5|G|2039
9YQ0|1|5|A|2040
9YQ0|1|5|A|2041
9YQ0|1|5|A|2042
9YQ0|1|5|A|2043
9YQ0|1|5|U|2044
9YQ0|1|5|G|2045
9YQ0|1|5|G|2046
9YQ0|1|5|A|2047
9YQ0|1|5|U|2048
9YQ0|1|5|G|2049
9YQ0|1|5|G|2050
9YQ0|1|5|C|2051
9YQ0|1|5|G|2052
9YQ0|1|5|C|2053

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain B

Ribosomal protein L3

Chain I

60S ribosomal protein L10

Chain O

Large ribosomal subunit protein uL13

Chain f

eL33

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1