IL_9YQ0_088

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

9YQ0|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_088 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.1257

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9YQ0|1|5|U|2415
9YQ0|1|5|G|2416
9YQ0|1|5|A|2417
9YQ0|1|5|A|2418
9YQ0|1|5|C|2419
*
9YQ0|1|5|G|2427
9YQ0|1|5|A|2428
9YQ0|1|5|A|2429

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL22

Chain R

Ribosomal protein L19

Chain l

eL39