IL_9YQ0_104
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 9YQ0|1|5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YQ0_104 not in the Motif Atlas
- Homologous match to IL_8GLP_107
- Geometric discrepancy: 0.0545
- The information below is about IL_8GLP_107
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28217.3
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
9YQ0|1|5|A|2850
9YQ0|1|5|G|2851
9YQ0|1|5|U|2852
9YQ0|1|5|C|2853
9YQ0|1|5|G|2854
9YQ0|1|5|G|2855
*
9YQ0|1|5|C|3837
9YQ0|1|5|U|3838
9YQ0|1|5|G|3839
9YQ0|1|5|U|3840
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
Coloring options: