IL_9YQ0_125

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGG*CCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ0|1|5|G|3970
9YQ0|1|5|G|3971
9YQ0|1|5|A|3972
9YQ0|1|5|G|3973
9YQ0|1|5|G|3974
*
9YQ0|1|5|C|4037
9YQ0|1|5|C|4038
9YQ0|1|5|G|4039
9YQ0|1|5|C|4040
9YQ0|1|5|C|4041
9YQ0|1|5|G|4042
9YQ0|1|5|G|4043
9YQ0|1|5|U|4044
9YQ0|1|5|G|4045
9YQ0|1|5|A|4046
9YQ0|1|5|A|4047
9YQ0|1|5|A|4048
9YQ0|1|5|U|4049
9YQ0|1|5|A|4050
9YQ0|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA