IL_9YQ0_138
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YQ0_138 not in the Motif Atlas
- Homologous match to IL_9PN5_101
- Geometric discrepancy: 0.0967
- The information below is about IL_9PN5_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9YQ0|1|5|C|4412
9YQ0|1|5|C|4413
9YQ0|1|5|A|4414
9YQ0|1|5|A|4415
9YQ0|1|5|G|4416
*
9YQ0|1|5|C|4426
9YQ0|1|5|G|4427
9YQ0|1|5|A|4428
9YQ0|1|5|C|4429
9YQ0|1|5|G|4430
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain m
- Ubiquitin A-52 residue ribosomal protein fusion product 1
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