IL_9YQ0_145
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAU*ACC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YQ0_145 not in the Motif Atlas
- Homologous match to IL_8GLP_152
- Geometric discrepancy: 0.0603
- The information below is about IL_8GLP_152
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9YQ0|1|5|G|4495
9YQ0|1|5|A|4496
9YQ0|1|5|U|4497
*
9YQ0|1|5|A|4503
9YQ0|1|5|C|4504
9YQ0|1|5|C|4505
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
Coloring options: