IL_9YQ0_187

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9YQ0|1|9|G|113, 9YQ0|1|9|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_187 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.1707

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9YQ0|1|9|U|112
9YQ0|1|9|G|113
9YQ0|1|9|G|114
9YQ0|1|9|U|115
*
9YQ0|1|9|A|348
9YQ0|1|9|A|349

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11