IL_9YQ0_221

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_221 not in the Motif Atlas

Homologous match to IL_9PN5_184

Geometric discrepancy: 0.0925

The information below is about IL_9PN5_184

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9YQ0|1|9|G|928
9YQ0|1|9|G|929
9YQ0|1|9|C|930
9YQ0|1|9|C|931
*
9YQ0|1|9|G|1010
9YQ0|1|9|A|1011
9YQ0|1|9|A|1012
9YQ0|1|9|U|1013

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

Ribosomal protein S13

Chain bb

40S ribosomal protein S27