IL_9YQ1_081

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9YQ1|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YQ1|1|5|U|1957
9YQ1|1|5|A|1958
9YQ1|1|5|U|1959
9YQ1|1|5|A|1960
9YQ1|1|5|G|1961
9YQ1|1|5|A|1962
9YQ1|1|5|C|1963
9YQ1|1|5|A|1964
9YQ1|1|5|G|1965
*
9YQ1|1|5|C|2022
9YQ1|1|5|C|2023
9YQ1|1|5|G|2024
9YQ1|1|5|A|2025
9YQ1|1|5|A|2026

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L18a

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1