IL_9YQ1_230

3D structure

PDB id

9YQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 3, Structure Ic

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ1_230 not in the Motif Atlas

Homologous match to IL_9PN5_190

Geometric discrepancy: 0.0646

The information below is about IL_9PN5_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9YQ1|1|9|C|1047
9YQ1|1|9|G|1048
9YQ1|1|9|A|1049
9YQ1|1|9|A|1050
9YQ1|1|9|G|1051
*
9YQ1|1|9|C|1067
9YQ1|1|9|G|1068
9YQ1|1|9|U|1069
9YQ1|1|9|A|1070
9YQ1|1|9|G|1071

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

Ribosomal protein L8

Chain OO

Small ribosomal subunit protein uS11

Chain aa

40S ribosomal protein S26