IL_9ZFD_009

3D structure

PDB id

9ZFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZFD_009 not in the Motif Atlas

Geometric match to IL_8CRE_476

Geometric discrepancy: 0.1192

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9ZFD|1|A|C|284
9ZFD|1|A|G|285
9ZFD|1|A|A|286
9ZFD|1|A|A|287
9ZFD|1|A|G|288
*
9ZFD|1|A|C|297
9ZFD|1|A|G|298
9ZFD|1|A|G|299
9ZFD|1|A|A|300
9ZFD|1|A|G|301

Current chains

Chain A

RNase P RNA

Nearby chains