IL_9ZID_011

3D structure

PDB id

9ZID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZID_011 not in the Motif Atlas

Geometric match to IL_9DFE_075

Geometric discrepancy: 0.2226

The information below is about IL_9DFE_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9ZID|1|A|C|347
9ZID|1|A|G|348
9ZID|1|A|G|349
9ZID|1|A|A|350
9ZID|1|A|G|351
*
9ZID|1|A|C|378
9ZID|1|A|G|379
9ZID|1|A|A|380
9ZID|1|A|A|381
9ZID|1|A|G|382

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains