IL_9ZIF_010

3D structure

PDB id

9ZIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 7

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIF_010 not in the Motif Atlas

Geometric match to IL_8GLP_284

Geometric discrepancy: 0.1185

The information below is about IL_8GLP_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9ZIF|1|A|C|284
9ZIF|1|A|G|285
9ZIF|1|A|A|286
9ZIF|1|A|A|287
9ZIF|1|A|G|288
*
9ZIF|1|A|C|297
9ZIF|1|A|G|298
9ZIF|1|A|G|299
9ZIF|1|A|A|300
9ZIF|1|A|G|301

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains