IL_9ZII_010

3D structure

PDB id

9ZII (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 10

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGGAGU*ACGAAG

Length

12 nucleotides

Bulged bases

9ZII|1|A|A|350, 9ZII|1|A|A|381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZII_010 not in the Motif Atlas

Geometric match to IL_8P9A_463

Geometric discrepancy: 0.3519

The information below is about IL_8P9A_463

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9ZII|1|A|C|347
9ZII|1|A|G|348
9ZII|1|A|G|349
9ZII|1|A|A|350
9ZII|1|A|G|351
9ZII|1|A|U|352
*
9ZII|1|A|A|377
9ZII|1|A|C|378
9ZII|1|A|G|379
9ZII|1|A|A|380
9ZII|1|A|A|381
9ZII|1|A|G|382

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains