IL_9ZIM_005

3D structure

PDB id

9ZIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Geobacillus stearothermophilus RNase P holoenzyme in 1 mM Mg2+, conformer 14

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UACG*UAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZIM_005 not in the Motif Atlas

Geometric match to IL_9H3G_140

Geometric discrepancy: 0.3466

The information below is about IL_9H3G_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9ZIM|1|A|U|154
9ZIM|1|A|A|155
9ZIM|1|A|C|156
9ZIM|1|A|G|157
*
9ZIM|1|A|U|169
9ZIM|1|A|A|170
9ZIM|1|A|U|171
9ZIM|1|A|G|172

Current chains

Chain A

RNase P RNA (417-MER)

Nearby chains