IL_9ZN2_128
3D structure
- PDB id
- 9ZN2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome initiation complex bound to IF1 and extended IF2-GDPCP (70S IC*)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 9ZN2|1|a|U|244, 9ZN2|1|a|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ZN2_128 not in the Motif Atlas
- Homologous match to IL_8B0X_013
- Geometric discrepancy: 0.121
- The information below is about IL_8B0X_013
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9ZN2|1|a|G|242
9ZN2|1|a|A|243
9ZN2|1|a|U|244
9ZN2|1|a|U|245
9ZN2|1|a|A|246
9ZN2|1|a|G|247
*
9ZN2|1|a|C|277
9ZN2|1|a|G|278
9ZN2|1|a|A|279
9ZN2|1|a|C|280
9ZN2|1|a|G|281
9ZN2|1|a|A|282
9ZN2|1|a|U|283
9ZN2|1|a|C|284
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain q
- Small ribosomal subunit protein uS17
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