IL_9ZN2_142

3D structure

PDB id

9ZN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome initiation complex bound to IF1 and extended IF2-GDPCP (70S IC*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZN2_142 not in the Motif Atlas

Homologous match to IL_8B0X_027

Geometric discrepancy: 0.1529

The information below is about IL_8B0X_027

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9ZN2|1|a|U|594
9ZN2|1|a|A|595
9ZN2|1|a|A|596
*
9ZN2|1|a|U|644
9ZN2|1|a|G|645

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain q

Small ribosomal subunit protein uS17