IL_9ZN2_172

3D structure

PDB id

9ZN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome initiation complex bound to IF1 and extended IF2-GDPCP (70S IC*)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ZN2_172 not in the Motif Atlas

Homologous match to IL_8B0X_058

Geometric discrepancy: 0.1229

The information below is about IL_8B0X_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.5

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9ZN2|1|a|G|1401
9ZN2|1|a|4OC|1402
9ZN2|1|a|C|1403
9ZN2|1|a|C|1404
*
9ZN2|1|a|G|1497
9ZN2|1|a|UR3|1498
9ZN2|1|a|A|1499
9ZN2|1|a|A|1500
9ZN2|1|a|C|1501

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain v

Transfer RNA; tRNA

Chain w

24MF mRNA