J10_1VWW_001

3D structure

PDB id

_1VW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

GACGUGGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUCGAUGAAGAACG*CGAGAAUUAA*UCGACACUUCGAACG*CGGCCCCGG*CCGGGGCUACGCC

Length

105 nucleotides

Bulged bases

1VWW|1|5|A|66, 1VWW|1|5|C|340, 1VWW|1|8|U|34, 1VWW|1|8|U|38, 1VWW|1|8|A|62, 1VWW|1|8|U|63, 1VWW|1|8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VWW|1|5|G|16
1VWW|1|5|A|17
1VWW|1|5|C|18
1VWW|1|5|G|19
1VWW|1|5|U|20
1VWW|1|5|G|21
1VWW|1|5|G|22
1VWW|1|5|C|23
1VWW|1|5|G|24
1VWW|1|5|A|25
1VWW|1|5|C|26
*
1VWW|1|5|G|57
1VWW|1|5|G|58
1VWW|1|5|A|59
1VWW|1|5|G|60
1VWW|1|5|A|61
1VWW|1|5|A|62
1VWW|1|5|G|63
1VWW|1|5|A|64
1VWW|1|5|A|65
1VWW|1|5|A|66
1VWW|1|5|C|67
*
1VWW|1|5|G|74
1VWW|1|5|G|75
1VWW|1|5|A|76
1VWW|1|5|U|77
1VWW|1|5|U|78
*
1VWW|1|5|A|105
1VWW|1|5|A|106
1VWW|1|5|G|107
1VWW|1|5|A|108
1VWW|1|5|G|109
*
1VWW|1|5|C|332
1VWW|1|5|U|333
1VWW|1|5|A|334
1VWW|1|5|A|335
1VWW|1|5|A|336
1VWW|1|5|U|337
1VWW|1|5|A|338
1VWW|1|5|C|339
1VWW|1|5|C|340
1VWW|1|5|G|341
1VWW|1|5|G|342
*
1VWW|1|8|C|32
1VWW|1|8|G|33
1VWW|1|8|U|34
1VWW|1|8|C|35
1VWW|1|8|G|36
1VWW|1|8|A|37
1VWW|1|8|U|38
1VWW|1|8|G|39
1VWW|1|8|A|40
1VWW|1|8|A|41
1VWW|1|8|G|42
1VWW|1|8|A|43
1VWW|1|8|A|44
1VWW|1|8|C|45
1VWW|1|8|G|46
*
1VWW|1|8|C|57
1VWW|1|8|G|58
1VWW|1|8|A|59
1VWW|1|8|G|60
1VWW|1|8|A|61
1VWW|1|8|A|62
1VWW|1|8|U|63
1VWW|1|8|U|64
1VWW|1|8|A|65
1VWW|1|8|A|66
*
1VWW|1|8|U|92
1VWW|1|8|C|93
1VWW|1|8|G|94
1VWW|1|8|A|95
1VWW|1|8|C|96
1VWW|1|8|A|97
1VWW|1|8|C|98
1VWW|1|8|U|99
1VWW|1|8|U|100
1VWW|1|8|C|101
1VWW|1|8|G|102
1VWW|1|8|A|103
1VWW|1|8|A|104
1VWW|1|8|C|105
1VWW|1|8|G|106
*
1VWW|1|8|C|113
1VWW|1|8|G|114
1VWW|1|8|G|115
1VWW|1|8|C|116
1VWW|1|8|C|117
1VWW|1|8|C|118
1VWW|1|8|C|119
1VWW|1|8|G|120
1VWW|1|8|G|121
*
1VWW|1|8|C|129
1VWW|1|8|C|130
1VWW|1|8|G|131
1VWW|1|8|G|132
1VWW|1|8|G|133
1VWW|1|8|G|134
1VWW|1|8|C|135
1VWW|1|8|U|136
1VWW|1|8|A|137
1VWW|1|8|C|138
1VWW|1|8|G|139
1VWW|1|8|C|140
1VWW|1|8|C|141

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains