J10_1VX3_001

3D structure

PDB id

_1VX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

GACGUGGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUCGAUGAAGAAC*GAGAAUUAA*UCGACACUUCGAACG*CGGCCCCG*CGGGGCUACGCC

Length

101 nucleotides

Bulged bases

1VX3|1|5|A|66, 1VX3|1|5|C|340, 1VX3|1|8|U|34, 1VX3|1|8|U|38, 1VX3|1|8|A|62, 1VX3|1|8|U|63, 1VX3|1|8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|16
1VX3|1|5|A|17
1VX3|1|5|C|18
1VX3|1|5|G|19
1VX3|1|5|U|20
1VX3|1|5|G|21
1VX3|1|5|G|22
1VX3|1|5|C|23
1VX3|1|5|G|24
1VX3|1|5|A|25
1VX3|1|5|C|26
*
1VX3|1|5|G|57
1VX3|1|5|G|58
1VX3|1|5|A|59
1VX3|1|5|G|60
1VX3|1|5|A|61
1VX3|1|5|A|62
1VX3|1|5|G|63
1VX3|1|5|A|64
1VX3|1|5|A|65
1VX3|1|5|A|66
1VX3|1|5|C|67
*
1VX3|1|5|G|74
1VX3|1|5|G|75
1VX3|1|5|A|76
1VX3|1|5|U|77
1VX3|1|5|U|78
*
1VX3|1|5|A|105
1VX3|1|5|A|106
1VX3|1|5|G|107
1VX3|1|5|A|108
1VX3|1|5|G|109
*
1VX3|1|5|C|332
1VX3|1|5|U|333
1VX3|1|5|A|334
1VX3|1|5|A|335
1VX3|1|5|A|336
1VX3|1|5|U|337
1VX3|1|5|A|338
1VX3|1|5|C|339
1VX3|1|5|C|340
1VX3|1|5|G|341
1VX3|1|5|G|342
*
1VX3|1|8|C|32
1VX3|1|8|G|33
1VX3|1|8|U|34
1VX3|1|8|C|35
1VX3|1|8|G|36
1VX3|1|8|A|37
1VX3|1|8|U|38
1VX3|1|8|G|39
1VX3|1|8|A|40
1VX3|1|8|A|41
1VX3|1|8|G|42
1VX3|1|8|A|43
1VX3|1|8|A|44
1VX3|1|8|C|45
*
1VX3|1|8|G|58
1VX3|1|8|A|59
1VX3|1|8|G|60
1VX3|1|8|A|61
1VX3|1|8|A|62
1VX3|1|8|U|63
1VX3|1|8|U|64
1VX3|1|8|A|65
1VX3|1|8|A|66
*
1VX3|1|8|U|92
1VX3|1|8|C|93
1VX3|1|8|G|94
1VX3|1|8|A|95
1VX3|1|8|C|96
1VX3|1|8|A|97
1VX3|1|8|C|98
1VX3|1|8|U|99
1VX3|1|8|U|100
1VX3|1|8|C|101
1VX3|1|8|G|102
1VX3|1|8|A|103
1VX3|1|8|A|104
1VX3|1|8|C|105
1VX3|1|8|G|106
*
1VX3|1|8|C|113
1VX3|1|8|G|114
1VX3|1|8|G|115
1VX3|1|8|C|116
1VX3|1|8|C|117
1VX3|1|8|C|118
1VX3|1|8|C|119
1VX3|1|8|G|120
*
1VX3|1|8|C|130
1VX3|1|8|G|131
1VX3|1|8|G|132
1VX3|1|8|G|133
1VX3|1|8|G|134
1VX3|1|8|C|135
1VX3|1|8|U|136
1VX3|1|8|A|137
1VX3|1|8|C|138
1VX3|1|8|G|139
1VX3|1|8|C|140
1VX3|1|8|C|141

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains