J10_3J71_001
3D structure
- PDB id
- _3J7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Experimental method
- Resolution
Loop
- Sequence
- GACGUGGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUACCGG*CGUCGAUGAAGAAC*GAGAAUUAA*UCGACACUUCGAACG*CGGCCCCG*CGGGGCUACGCC
- Length
- 101 nucleotides
- Bulged bases
- 3J71|1|5|A|66, 3J71|1|5|C|340, 3J71|1|8|U|34, 3J71|1|8|U|38, 3J71|1|8|A|62, 3J71|1|8|U|63, 3J71|1|8|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J71|1|5|G|16
3J71|1|5|A|17
3J71|1|5|C|18
3J71|1|5|G|19
3J71|1|5|U|20
3J71|1|5|G|21
3J71|1|5|G|22
3J71|1|5|C|23
3J71|1|5|G|24
3J71|1|5|A|25
3J71|1|5|C|26
*
3J71|1|5|G|57
3J71|1|5|G|58
3J71|1|5|A|59
3J71|1|5|G|60
3J71|1|5|A|61
3J71|1|5|A|62
3J71|1|5|G|63
3J71|1|5|A|64
3J71|1|5|A|65
3J71|1|5|A|66
3J71|1|5|C|67
*
3J71|1|5|G|74
3J71|1|5|G|75
3J71|1|5|A|76
3J71|1|5|U|77
3J71|1|5|U|78
*
3J71|1|5|A|105
3J71|1|5|A|106
3J71|1|5|G|107
3J71|1|5|A|108
3J71|1|5|G|109
*
3J71|1|5|C|332
3J71|1|5|U|333
3J71|1|5|A|334
3J71|1|5|A|335
3J71|1|5|A|336
3J71|1|5|U|337
3J71|1|5|A|338
3J71|1|5|C|339
3J71|1|5|C|340
3J71|1|5|G|341
3J71|1|5|G|342
*
3J71|1|8|C|32
3J71|1|8|G|33
3J71|1|8|U|34
3J71|1|8|C|35
3J71|1|8|G|36
3J71|1|8|A|37
3J71|1|8|U|38
3J71|1|8|G|39
3J71|1|8|A|40
3J71|1|8|A|41
3J71|1|8|G|42
3J71|1|8|A|43
3J71|1|8|A|44
3J71|1|8|C|45
*
3J71|1|8|G|58
3J71|1|8|A|59
3J71|1|8|G|60
3J71|1|8|A|61
3J71|1|8|A|62
3J71|1|8|U|63
3J71|1|8|U|64
3J71|1|8|A|65
3J71|1|8|A|66
*
3J71|1|8|U|92
3J71|1|8|C|93
3J71|1|8|G|94
3J71|1|8|A|95
3J71|1|8|C|96
3J71|1|8|A|97
3J71|1|8|C|98
3J71|1|8|U|99
3J71|1|8|U|100
3J71|1|8|C|101
3J71|1|8|G|102
3J71|1|8|A|103
3J71|1|8|A|104
3J71|1|8|C|105
3J71|1|8|G|106
*
3J71|1|8|C|113
3J71|1|8|G|114
3J71|1|8|G|115
3J71|1|8|C|116
3J71|1|8|C|117
3J71|1|8|C|118
3J71|1|8|C|119
3J71|1|8|G|120
*
3J71|1|8|C|130
3J71|1|8|G|131
3J71|1|8|G|132
3J71|1|8|G|133
3J71|1|8|G|134
3J71|1|8|C|135
3J71|1|8|U|136
3J71|1|8|A|137
3J71|1|8|C|138
3J71|1|8|G|139
3J71|1|8|C|140
3J71|1|8|C|141
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain X
- Ribosomal protein uL23
- Chain Y
- Ribosomal protein uL24
- Chain h
- Ribosomal protein uL29
- Chain i
- Ribosomal protein eL36
- Chain j
- Ribosomal protein eL37
- Chain l
- Ribosomal protein eL39
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