Loop J10_4V6C

3D structure

PDB id: _4V6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Experimental method
Resolution

Loop

Sequence: CGACUAAG*UACAAGCAG*CGUAC*GGG*CA*UGAACUC*GUAC*GCGCUG*CC*GG
Length: 48 nucleotides
Bulged bases: 4V6C|1|DA|U|562
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V6C|1|DA|C|8
4V6C|1|DA|G|9
4V6C|1|DA|A|10
4V6C|1|DA|C|11
4V6C|1|DA|U|12
4V6C|1|DA|A|13
4V6C|1|DA|A|14
4V6C|1|DA|G|15
*
4V6C|1|DA|U|525
4V6C|1|DA|A|526
4V6C|1|DA|C|527
4V6C|1|DA|A|528
4V6C|1|DA|A|529
4V6C|1|DA|G|530
4V6C|1|DA|C|531
4V6C|1|DA|A|532
4V6C|1|DA|G|533
*
4V6C|1|DA|C|560
4V6C|1|DA|G|561
4V6C|1|DA|U|562
4V6C|1|DA|A|563
4V6C|1|DA|C|564
*
4V6C|1|DA|G|577
4V6C|1|DA|G|578
4V6C|1|DA|G|579
*
4V6C|1|DA|C|1261
4V6C|1|DA|A|1262
*
4V6C|1|DA|U|2017
4V6C|1|DA|G|2018
4V6C|1|DA|A|2019
4V6C|1|DA|A|2020
4V6C|1|DA|C|2021
4V6C|1|DA|U|2022
4V6C|1|DA|C|2023
*
4V6C|1|DA|G|2040
4V6C|1|DA|U|2041
4V6C|1|DA|A|2042
4V6C|1|DA|C|2043
*
4V6C|1|DA|G|2625
4V6C|1|DA|C|2626
4V6C|1|DA|G|2627
4V6C|1|DA|C|2628
4V6C|1|DA|U|2629
4V6C|1|DA|G|2630
*
4V6C|1|DA|C|2788
4V6C|1|DA|C|2789
*
4V6C|1|DA|G|2894
4V6C|1|DA|G|2895

Current chains

Chain DA: 23S rRNA

Nearby chains

Chain D0: 50S ribosomal protein L32
Chain DD: 50S ribosomal protein L3
Chain DE: 50S ribosomal protein L4
Chain DJ: 50S ribosomal protein L13
Chain DQ: 50S ribosomal protein L20
Chain DR: 50S ribosomal protein L21
Chain DS: 50S ribosomal protein L22

J10_4V6C_001