J10_4V7S_001

3D structure

PDB id

_4V7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

CGACUAAG*UACAAGCAG*CGUACCU*AUGGG*CA*UGAACUC*GUAC*GCGCUG*CC*GG

Length

52 nucleotides

Bulged bases

4V7S|1|DA|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7S|1|DA|C|8
4V7S|1|DA|G|9
4V7S|1|DA|A|10
4V7S|1|DA|C|11
4V7S|1|DA|U|12
4V7S|1|DA|A|13
4V7S|1|DA|A|14
4V7S|1|DA|G|15
*
4V7S|1|DA|U|525
4V7S|1|DA|A|526
4V7S|1|DA|C|527
4V7S|1|DA|A|528
4V7S|1|DA|A|529
4V7S|1|DA|G|530
4V7S|1|DA|C|531
4V7S|1|DA|A|532
4V7S|1|DA|G|533
*
4V7S|1|DA|C|560
4V7S|1|DA|G|561
4V7S|1|DA|U|562
4V7S|1|DA|A|563
4V7S|1|DA|C|564
4V7S|1|DA|C|565
4V7S|1|DA|U|566
*
4V7S|1|DA|A|575
4V7S|1|DA|U|576
4V7S|1|DA|G|577
4V7S|1|DA|G|578
4V7S|1|DA|G|579
*
4V7S|1|DA|C|1261
4V7S|1|DA|A|1262
*
4V7S|1|DA|U|2017
4V7S|1|DA|G|2018
4V7S|1|DA|A|2019
4V7S|1|DA|A|2020
4V7S|1|DA|C|2021
4V7S|1|DA|U|2022
4V7S|1|DA|C|2023
*
4V7S|1|DA|G|2040
4V7S|1|DA|U|2041
4V7S|1|DA|A|2042
4V7S|1|DA|C|2043
*
4V7S|1|DA|G|2625
4V7S|1|DA|C|2626
4V7S|1|DA|G|2627
4V7S|1|DA|C|2628
4V7S|1|DA|U|2629
4V7S|1|DA|G|2630
*
4V7S|1|DA|C|2788
4V7S|1|DA|C|2789
*
4V7S|1|DA|G|2894
4V7S|1|DA|G|2895

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DJ

50S ribosomal protein L13

Chain DL

50S ribosomal protein L15

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21

Chain DS

50S ribosomal protein L22