J10_4W21_001

3D structure

PDB id

_4W2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

GUGGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUCGAUGAAGAAC*GAGAAUUAA*UCGACACUUCGAACG*CG*UAC

Length

79 nucleotides

Bulged bases

4W21|1|5|A|66, 4W21|1|8|U|34, 4W21|1|8|U|38, 4W21|1|8|A|62, 4W21|1|8|U|63, 4W21|1|8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W21|1|5|G|19
4W21|1|5|U|20
4W21|1|5|G|21
4W21|1|5|G|22
4W21|1|5|C|23
4W21|1|5|G|24
4W21|1|5|A|25
4W21|1|5|C|26
*
4W21|1|5|G|57
4W21|1|5|G|58
4W21|1|5|A|59
4W21|1|5|G|60
4W21|1|5|A|61
4W21|1|5|A|62
4W21|1|5|G|63
4W21|1|5|A|64
4W21|1|5|A|65
4W21|1|5|A|66
4W21|1|5|C|67
*
4W21|1|5|G|74
4W21|1|5|G|75
4W21|1|5|A|76
4W21|1|5|U|77
4W21|1|5|U|78
*
4W21|1|5|A|105
4W21|1|5|A|106
4W21|1|5|G|107
4W21|1|5|A|108
4W21|1|5|G|109
*
4W21|1|5|C|332
4W21|1|5|U|333
4W21|1|5|A|334
4W21|1|5|A|335
4W21|1|5|A|336
4W21|1|5|U|337
4W21|1|5|A|338
4W21|1|5|C|339
*
4W21|1|8|G|33
4W21|1|8|U|34
4W21|1|8|C|35
4W21|1|8|G|36
4W21|1|8|A|37
4W21|1|8|U|38
4W21|1|8|G|39
4W21|1|8|A|40
4W21|1|8|A|41
4W21|1|8|G|42
4W21|1|8|A|43
4W21|1|8|A|44
4W21|1|8|C|45
*
4W21|1|8|G|58
4W21|1|8|A|59
4W21|1|8|G|60
4W21|1|8|A|61
4W21|1|8|A|62
4W21|1|8|U|63
4W21|1|8|U|64
4W21|1|8|A|65
4W21|1|8|A|66
*
4W21|1|8|U|92
4W21|1|8|C|93
4W21|1|8|G|94
4W21|1|8|A|95
4W21|1|8|C|96
4W21|1|8|A|97
4W21|1|8|C|98
4W21|1|8|U|99
4W21|1|8|U|100
4W21|1|8|C|101
4W21|1|8|G|102
4W21|1|8|A|103
4W21|1|8|A|104
4W21|1|8|C|105
4W21|1|8|G|106
*
4W21|1|8|C|113
4W21|1|8|G|114
*
4W21|1|8|U|136
4W21|1|8|A|137
4W21|1|8|C|138

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains