J10_5AA0_001
3D structure
- PDB id
- _5AA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Experimental method
- Resolution
Loop
- Sequence
- CAAGAUGGUAAG*UACAAGCAG*CGUGC*GAG*CAUGAGUAA*UGAAAUUGAACUG*CUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGUCUUG
- Length
- 92 nucleotides
- Bulged bases
- 5AA0|1|AA|C|527||||P_1, 5AA0|1|AA|U|562||||P_1, 5AA0|1|AA|U|1267||||P_1, 5AA0|1|AA|A|2015||||P_1, 5AA0|1|AA|U|2797||||P_1, 5AA0|1|AA|C|2798||||P_1, 5AA0|1|AA|A|2801||||P_1, 5AA0|1|AA|A|2809||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AA0|1|AA|C|4||||P_1
5AA0|1|AA|A|5||||P_1
5AA0|1|AA|A|6||||P_1
5AA0|1|AA|G|7||||P_1
5AA0|1|AA|A|8||||P_1
5AA0|1|AA|U|9||||P_1
5AA0|1|AA|G|10||||P_1
5AA0|1|AA|G|11||||P_1
5AA0|1|AA|U|12||||P_1
5AA0|1|AA|A|13||||P_1
5AA0|1|AA|A|14||||P_1
5AA0|1|AA|G|15||||P_1
*
5AA0|1|AA|U|525||||P_1
5AA0|1|AA|A|526||||P_1
5AA0|1|AA|C|527||||P_1
5AA0|1|AA|A|528||||P_1
5AA0|1|AA|A|529||||P_1
5AA0|1|AA|G|530||||P_1
5AA0|1|AA|C|531||||P_1
5AA0|1|AA|A|532||||P_1
5AA0|1|AA|G|533||||P_1
*
5AA0|1|AA|C|560||||P_1
5AA0|1|AA|G|561||||P_1
5AA0|1|AA|U|562||||P_1
5AA0|1|AA|G|563||||P_1
5AA0|1|AA|C|564||||P_1
*
5AA0|1|AA|G|577||||P_1
5AA0|1|AA|A|578||||P_1
5AA0|1|AA|G|579||||P_1
*
5AA0|1|AA|C|1261||||P_1
5AA0|1|AA|A|1262||||P_1
5AA0|1|AA|U|1263||||P_1
5AA0|1|AA|G|1264||||P_1
5AA0|1|AA|A|1265||||P_1
5AA0|1|AA|G|1266||||P_1
5AA0|1|AA|U|1267||||P_1
5AA0|1|AA|A|1268||||P_1
5AA0|1|AA|A|1269||||P_1
*
5AA0|1|AA|U|2011||||P_1
5AA0|1|AA|G|2012||||P_1
5AA0|1|AA|A|2013||||P_1
5AA0|1|AA|A|2014||||P_1
5AA0|1|AA|A|2015||||P_1
5AA0|1|AA|U|2016||||P_1
5AA0|1|AA|U|2017||||P_1
5AA0|1|AA|G|2018||||P_1
5AA0|1|AA|A|2019||||P_1
5AA0|1|AA|A|2020||||P_1
5AA0|1|AA|C|2021||||P_1
5AA0|1|AA|U|2022||||P_1
5AA0|1|AA|G|2023||||P_1
*
5AA0|1|AA|C|2040||||P_1
5AA0|1|AA|U|2041||||P_1
5AA0|1|AA|A|2042||||P_1
5AA0|1|AA|C|2043||||P_1
*
5AA0|1|AA|G|2625||||P_1
5AA0|1|AA|C|2626||||P_1
5AA0|1|AA|G|2627||||P_1
5AA0|1|AA|C|2628||||P_1
5AA0|1|AA|A|2629||||P_1
5AA0|1|AA|G|2630||||P_1
*
5AA0|1|AA|C|2788||||P_1
5AA0|1|AA|C|2789||||P_1
5AA0|1|AA|A|2790||||P_1
5AA0|1|AA|C|2791||||P_1
5AA0|1|AA|G|2792||||P_1
5AA0|1|AA|G|2793||||P_1
5AA0|1|AA|C|2794||||P_1
5AA0|1|AA|G|2795||||P_1
5AA0|1|AA|U|2797||||P_1
5AA0|1|AA|C|2798||||P_1
5AA0|1|AA|A|2799||||P_1
5AA0|1|AA|A|2801||||P_1
5AA0|1|AA|G|2802||||P_1
5AA0|1|AA|C|2803||||P_1
5AA0|1|AA|C|2804||||P_1
5AA0|1|AA|G|2805||||P_1
5AA0|1|AA|G|2807||||P_1
5AA0|1|AA|U|2808||||P_1
5AA0|1|AA|A|2809||||P_1
5AA0|1|AA|A|2810||||P_1
5AA0|1|AA|G|2811||||P_1
*
5AA0|1|AA|C|2889||||P_1
5AA0|1|AA|G|2891||||P_1
5AA0|1|AA|A|2892||||P_1
5AA0|1|AA|G|2893||||P_1
5AA0|1|AA|G|2894||||P_1
5AA0|1|AA|U|2895||||P_1
5AA0|1|AA|C|2896||||P_1
5AA0|1|AA|U|2897||||P_1
5AA0|1|AA|U|2898||||P_1
5AA0|1|AA|G|2899||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AK
- 50S ribosomal protein L13
- Chain AO
- 50S ribosomal protein L17
- Chain AR
- 50S ribosomal protein L20
- Chain AS
- 50S ribosomal protein L21
- Chain AT
- 50S ribosomal protein L22
- Chain Ab
- 50S ribosomal protein L32
Coloring options: