Loop J10_5NGM

3D structure

PDB id: _5NG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Experimental method
Resolution

Loop

Sequence: UUAUUAAG*UACAAGUAG*CGUGC*GAA*UG*CAUAGUA*UUAC*GCGUAG*CC*GA
Length: 48 nucleotides
Bulged bases: 5NGM|1|AA|G|575
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NGM|1|AA|U|8
5NGM|1|AA|U|9
5NGM|1|AA|A|10
5NGM|1|AA|U|11
5NGM|1|AA|U|12
5NGM|1|AA|A|13
5NGM|1|AA|A|14
5NGM|1|AA|G|15
*
5NGM|1|AA|U|570
5NGM|1|AA|A|571
5NGM|1|AA|C|572
5NGM|1|AA|A|573
5NGM|1|AA|A|574
5NGM|1|AA|G|575
5NGM|1|AA|U|576
5NGM|1|AA|A|577
5NGM|1|AA|G|578
*
5NGM|1|AA|C|603
5NGM|1|AA|G|604
5NGM|1|AA|U|605
5NGM|1|AA|G|606
5NGM|1|AA|C|607
*
5NGM|1|AA|G|620
5NGM|1|AA|A|621
5NGM|1|AA|A|622
*
5NGM|1|AA|U|1299
5NGM|1|AA|G|1300
*
5NGM|1|AA|C|2044
5NGM|1|AA|A|2045
5NGM|1|AA|U|2046
5NGM|1|AA|A|2047
5NGM|1|AA|G|2048
5NGM|1|AA|U|2049
5NGM|1|AA|A|2050
*
5NGM|1|AA|U|2067
5NGM|1|AA|U|2068
5NGM|1|AA|A|2069
5NGM|1|AA|C|2070
*
5NGM|1|AA|G|2652
5NGM|1|AA|C|2653
5NGM|1|AA|G|2654
5NGM|1|AA|U|2655
5NGM|1|AA|A|2656
5NGM|1|AA|G|2657
*
5NGM|1|AA|C|2815
5NGM|1|AA|C|2816
*
5NGM|1|AA|G|2913
5NGM|1|AA|A|2914

Current chains

Chain AA: 23S Ribosomal RNA

Nearby chains

Chain AD: 50S ribosomal protein L3
Chain AE: 50S ribosomal protein L4
Chain AH: 50S ribosomal protein L13
Chain AO: 50S ribosomal protein L20
Chain AP: 50S ribosomal protein L21
Chain AQ: 50S ribosomal protein L22
Chain AZ: 50S ribosomal protein L32

J10_5NGM_001