J10_6GZZ_002

3D structure

PDB id

_6GZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

CAG*CGUGCCU*AUGAGCCGGCGACUC*GGAC*GUUC*GCGUUCC*GAAGUGCGAAUGCCGGCAUGAGUAACGAUAAA*UC*GCGCGG*CCGGUGAAAUUG

Length

92 nucleotides

Bulged bases

6GZZ|1|A2|A|559, 6GZZ|1|A2|U|587, 6GZZ|1|A2|G|718, 6GZZ|1|A2|G|1296, 6GZZ|1|A2|U|1303, 6GZZ|1|A2|G|1319, 6GZZ|1|A2|A|1320, 6GZZ|1|A2|U|1321, 6GZZ|1|A2|A|1322, 6GZZ|1|A2|C|1695, 6GZZ|1|A2|G|1696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|558
6GZZ|1|A2|A|559
6GZZ|1|A2|G|560
*
6GZZ|1|A2|C|585
6GZZ|1|A2|G|586
6GZZ|1|A2|U|587
6GZZ|1|A2|G|588
6GZZ|1|A2|C|589
6GZZ|1|A2|C|590
6GZZ|1|A2|U|591
*
6GZZ|1|A2|A|600
6GZZ|1|A2|U|601
6GZZ|1|A2|G|602
6GZZ|1|A2|A|603
6GZZ|1|A2|G|604
6GZZ|1|A2|C|605
6GZZ|1|A2|C|606
6GZZ|1|A2|G|607
6GZZ|1|A2|G|608
6GZZ|1|A2|C|609
6GZZ|1|A2|G|610
6GZZ|1|A2|A|611
6GZZ|1|A2|C|612
6GZZ|1|A2|U|613
6GZZ|1|A2|C|614
*
6GZZ|1|A2|G|717
6GZZ|1|A2|G|718
6GZZ|1|A2|A|719
6GZZ|1|A2|C|720
*
6GZZ|1|A2|G|858
6GZZ|1|A2|U|859
6GZZ|1|A2|U|860
6GZZ|1|A2|C|861
*
6GZZ|1|A2|G|1242
6GZZ|1|A2|C|1243
6GZZ|1|A2|G|1244
6GZZ|1|A2|U|1245
6GZZ|1|A2|U|1246
6GZZ|1|A2|C|1247
6GZZ|1|A2|C|1248
*
6GZZ|1|A2|G|1293
6GZZ|1|A2|A|1294
6GZZ|1|A2|A|1295
6GZZ|1|A2|G|1296
6GZZ|1|A2|U|1297
6GZZ|1|A2|G|1298
6GZZ|1|A2|C|1299
6GZZ|1|A2|G|1300
6GZZ|1|A2|A|1301
6GZZ|1|A2|A|1302
6GZZ|1|A2|U|1303
6GZZ|1|A2|G|1304
6GZZ|1|A2|C|1305
6GZZ|1|A2|C|1306
6GZZ|1|A2|G|1307
6GZZ|1|A2|G|1308
6GZZ|1|A2|C|1309
6GZZ|1|A2|A|1310
6GZZ|1|A2|U|1311
6GZZ|1|A2|G|1312
6GZZ|1|A2|A|1313
6GZZ|1|A2|G|1314
6GZZ|1|A2|U|1315
6GZZ|1|A2|A|1316
6GZZ|1|A2|A|1317
6GZZ|1|A2|C|1318
6GZZ|1|A2|G|1319
6GZZ|1|A2|A|1320
6GZZ|1|A2|U|1321
6GZZ|1|A2|A|1322
6GZZ|1|A2|A|1323
6GZZ|1|A2|A|1324
*
6GZZ|1|A2|U|1342
6GZZ|1|A2|C|1343
*
6GZZ|1|A2|G|1694
6GZZ|1|A2|C|1695
6GZZ|1|A2|G|1696
6GZZ|1|A2|C|1697
6GZZ|1|A2|G|1698
6GZZ|1|A2|G|1699
*
6GZZ|1|A2|C|2031
6GZZ|1|A2|C|2032
6GZZ|1|A2|G|2033
6GZZ|1|A2|G|2034
6GZZ|1|A2|U|2035
6GZZ|1|A2|G|2036
6GZZ|1|A2|A|2037
6GZZ|1|A2|A|2038
6GZZ|1|A2|A|2039
6GZZ|1|A2|U|2040
6GZZ|1|A2|U|2041
6GZZ|1|A2|G|2042

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15

Chain M2

50S ribosomal protein L17

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21

Chain R2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32

Chain d2

50S ribosomal protein L35