J10_6PPF_002

3D structure

PDB id

_6PP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

UUAGAAAG*UACAAGUAG*CGUGC*GAA*UA*UAUAGUA*UUAC*GCGCAG*CC*GA

Length

48 nucleotides

Bulged bases

6PPF|1|A|G|576, 6PPF|1|A|U|606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PPF|1|A|U|8
6PPF|1|A|U|9
6PPF|1|A|A|10
6PPF|1|A|G|11
6PPF|1|A|A|12
6PPF|1|A|A|13
6PPF|1|A|A|14
6PPF|1|A|G|15
*
6PPF|1|A|U|571
6PPF|1|A|A|572
6PPF|1|A|C|573
6PPF|1|A|A|574
6PPF|1|A|A|575
6PPF|1|A|G|576
6PPF|1|A|U|577
6PPF|1|A|A|578
6PPF|1|A|G|579
*
6PPF|1|A|C|604
6PPF|1|A|G|605
6PPF|1|A|U|606
6PPF|1|A|G|607
6PPF|1|A|C|608
*
6PPF|1|A|G|621
6PPF|1|A|A|622
6PPF|1|A|A|623
*
6PPF|1|A|U|1301
6PPF|1|A|A|1302
*
6PPF|1|A|U|2046
6PPF|1|A|A|2047
6PPF|1|A|U|2048
6PPF|1|A|A|2049
6PPF|1|A|G|2050
6PPF|1|A|U|2051
6PPF|1|A|A|2052
*
6PPF|1|A|U|2069
6PPF|1|A|U|2070
6PPF|1|A|A|2071
6PPF|1|A|C|2072
*
6PPF|1|A|G|2654
6PPF|1|A|C|2655
6PPF|1|A|G|2656
6PPF|1|A|C|2657
6PPF|1|A|A|2658
6PPF|1|A|G|2659
*
6PPF|1|A|C|2817
6PPF|1|A|C|2818
*
6PPF|1|A|G|2918
6PPF|1|A|A|2919

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20

Chain R

50S ribosomal protein L21

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32