Loop J10_8Y39

3D structure

PDB id: _8Y3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Experimental method
Resolution

Loop

Sequence: UUAUUAAG*UACAAGUAG*CGUGC*GAA*UG*CAUAGUA*UUAC*GCGUAG*CC*GA
Length: 48 nucleotides
Bulged bases: 8Y39|1|A|U|576, 8Y39|1|A|U|605
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8Y39|1|A|U|8
8Y39|1|A|U|9
8Y39|1|A|A|10
8Y39|1|A|U|11
8Y39|1|A|U|12
8Y39|1|A|A|13
8Y39|1|A|A|14
8Y39|1|A|G|15
*
8Y39|1|A|U|570
8Y39|1|A|A|571
8Y39|1|A|C|572
8Y39|1|A|A|573
8Y39|1|A|A|574
8Y39|1|A|G|575
8Y39|1|A|U|576
8Y39|1|A|A|577
8Y39|1|A|G|578
*
8Y39|1|A|C|603
8Y39|1|A|G|604
8Y39|1|A|U|605
8Y39|1|A|G|606
8Y39|1|A|C|607
*
8Y39|1|A|G|620
8Y39|1|A|A|621
8Y39|1|A|A|622
*
8Y39|1|A|U|1299
8Y39|1|A|G|1300
*
8Y39|1|A|C|2044
8Y39|1|A|A|2045
8Y39|1|A|U|2046
8Y39|1|A|A|2047
8Y39|1|A|G|2048
8Y39|1|A|U|2049
8Y39|1|A|A|2050
*
8Y39|1|A|U|2067
8Y39|1|A|U|2068
8Y39|1|A|A|2069
8Y39|1|A|C|2070
*
8Y39|1|A|G|2652
8Y39|1|A|C|2653
8Y39|1|A|G|2654
8Y39|1|A|U|2655
8Y39|1|A|A|2656
8Y39|1|A|G|2657
*
8Y39|1|A|C|2815
8Y39|1|A|C|2816
*
8Y39|1|A|G|2913
8Y39|1|A|A|2914

Current chains

Chain A: 23S ribosomal RNA

Nearby chains

Chain D: Large ribosomal subunit protein uL3
Chain E: Large ribosomal subunit protein uL4
Chain H: Large ribosomal subunit protein uL13
Chain O: Large ribosomal subunit protein bL20
Chain P: Large ribosomal subunit protein bL21
Chain Q: Large ribosomal subunit protein uL22
Chain Z: Large ribosomal subunit protein bL32

J10_8Y39_001