J10_9MKK_001

3D structure

PDB id

_9MK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

CGACUAAG*UACAAGCAG*CGUAC*GGG*CA*UGAACUC*GUAC*GCGCUG*CC*GG

Length

48 nucleotides

Bulged bases

9MKK|1|a|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|a|C|8
9MKK|1|a|G|9
9MKK|1|a|A|10
9MKK|1|a|C|11
9MKK|1|a|U|12
9MKK|1|a|A|13
9MKK|1|a|A|14
9MKK|1|a|G|15
*
9MKK|1|a|U|525
9MKK|1|a|A|526
9MKK|1|a|C|527
9MKK|1|a|A|528
9MKK|1|a|A|529
9MKK|1|a|G|530
9MKK|1|a|C|531
9MKK|1|a|A|532
9MKK|1|a|G|533
*
9MKK|1|a|C|560
9MKK|1|a|G|561
9MKK|1|a|U|562
9MKK|1|a|A|563
9MKK|1|a|C|564
*
9MKK|1|a|G|577
9MKK|1|a|G|578
9MKK|1|a|G|579
*
9MKK|1|a|C|1261
9MKK|1|a|A|1262
*
9MKK|1|a|U|2017
9MKK|1|a|G|2018
9MKK|1|a|A|2019
9MKK|1|a|A|2020
9MKK|1|a|C|2021
9MKK|1|a|U|2022
9MKK|1|a|C|2023
*
9MKK|1|a|G|2040
9MKK|1|a|U|2041
9MKK|1|a|A|2042
9MKK|1|a|C|2043
*
9MKK|1|a|G|2625
9MKK|1|a|C|2626
9MKK|1|a|G|2627
9MKK|1|a|C|2628
9MKK|1|a|U|2629
9MKK|1|a|G|2630
*
9MKK|1|a|C|2788
9MKK|1|a|C|2789
*
9MKK|1|a|G|2894
9MKK|1|a|G|2895

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain e

Large ribosomal subunit protein uL4

Chain i

Large ribosomal subunit protein uL13

Chain p

50S ribosomal protein L20

Chain q

Large ribosomal subunit protein bL21

Chain z

50S ribosomal protein L32