J11_1NJM_002

3D structure

PDB id

_1NJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAGG*UUACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

62 nucleotides

Bulged bases

1NJM|1|0|C|537, 1NJM|1|0|C|541, 1NJM|1|0|A|542, 1NJM|1|0|U|571, 1NJM|1|0|U|2004, 1NJM|1|0|A|2770, 1NJM|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJM|1|0|A|8
1NJM|1|0|U|9
1NJM|1|0|A|10
1NJM|1|0|G|11
1NJM|1|0|U|12
1NJM|1|0|A|13
1NJM|1|0|A|14
1NJM|1|0|G|15
1NJM|1|0|G|16
*
1NJM|1|0|U|534
1NJM|1|0|U|535
1NJM|1|0|A|536
1NJM|1|0|C|537
1NJM|1|0|A|538
1NJM|1|0|A|539
1NJM|1|0|G|540
1NJM|1|0|C|541
1NJM|1|0|A|542
1NJM|1|0|G|543
*
1NJM|1|0|C|569
1NJM|1|0|G|570
1NJM|1|0|U|571
1NJM|1|0|G|572
1NJM|1|0|C|573
*
1NJM|1|0|G|586
1NJM|1|0|A|587
1NJM|1|0|G|588
*
1NJM|1|0|C|1274
1NJM|1|0|A|1275
*
1NJM|1|0|U|2000
1NJM|1|0|G|2001
1NJM|1|0|A|2002
1NJM|1|0|A|2003
1NJM|1|0|U|2004
1NJM|1|0|U|2005
1NJM|1|0|G|2006
*
1NJM|1|0|C|2023
1NJM|1|0|U|2024
1NJM|1|0|A|2025
1NJM|1|0|C|2026
*
1NJM|1|0|G|2604
1NJM|1|0|C|2605
1NJM|1|0|G|2606
1NJM|1|0|C|2607
1NJM|1|0|A|2608
1NJM|1|0|G|2609
*
1NJM|1|0|C|2768
1NJM|1|0|C|2769
1NJM|1|0|A|2770
1NJM|1|0|C|2771
*
1NJM|1|0|G|2781
1NJM|1|0|G|2782
1NJM|1|0|U|2783
1NJM|1|0|A|2784
1NJM|1|0|A|2785
1NJM|1|0|G|2786
*
1NJM|1|0|C|2864
1NJM|1|0|G|2865
1NJM|1|0|A|2866
1NJM|1|0|G|2867
1NJM|1|0|G|2868
1NJM|1|0|U|2869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains