J11_1NJN_001

3D structure

PDB id

_1NJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAGGG*CUUACAAGCAG*CGUGCCU*AUGAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

68 nucleotides

Bulged bases

1NJN|1|0|C|537, 1NJN|1|0|G|540, 1NJN|1|0|C|541, 1NJN|1|0|A|542, 1NJN|1|0|U|571, 1NJN|1|0|U|2004, 1NJN|1|0|A|2770, 1NJN|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJN|1|0|A|8
1NJN|1|0|U|9
1NJN|1|0|A|10
1NJN|1|0|G|11
1NJN|1|0|U|12
1NJN|1|0|A|13
1NJN|1|0|A|14
1NJN|1|0|G|15
1NJN|1|0|G|16
1NJN|1|0|G|17
*
1NJN|1|0|C|533
1NJN|1|0|U|534
1NJN|1|0|U|535
1NJN|1|0|A|536
1NJN|1|0|C|537
1NJN|1|0|A|538
1NJN|1|0|A|539
1NJN|1|0|G|540
1NJN|1|0|C|541
1NJN|1|0|A|542
1NJN|1|0|G|543
*
1NJN|1|0|C|569
1NJN|1|0|G|570
1NJN|1|0|U|571
1NJN|1|0|G|572
1NJN|1|0|C|573
1NJN|1|0|C|574
1NJN|1|0|U|575
*
1NJN|1|0|A|584
1NJN|1|0|U|585
1NJN|1|0|G|586
1NJN|1|0|A|587
1NJN|1|0|G|588
*
1NJN|1|0|C|1274
1NJN|1|0|A|1275
*
1NJN|1|0|U|2000
1NJN|1|0|G|2001
1NJN|1|0|A|2002
1NJN|1|0|A|2003
1NJN|1|0|U|2004
1NJN|1|0|U|2005
1NJN|1|0|G|2006
*
1NJN|1|0|C|2023
1NJN|1|0|U|2024
1NJN|1|0|A|2025
1NJN|1|0|C|2026
*
1NJN|1|0|G|2604
1NJN|1|0|C|2605
1NJN|1|0|G|2606
1NJN|1|0|C|2607
1NJN|1|0|A|2608
1NJN|1|0|G|2609
*
1NJN|1|0|C|2768
1NJN|1|0|C|2769
1NJN|1|0|A|2770
1NJN|1|0|C|2771
*
1NJN|1|0|G|2781
1NJN|1|0|G|2782
1NJN|1|0|U|2783
1NJN|1|0|A|2784
1NJN|1|0|A|2785
1NJN|1|0|G|2786
*
1NJN|1|0|C|2864
1NJN|1|0|G|2865
1NJN|1|0|A|2866
1NJN|1|0|G|2867
1NJN|1|0|G|2868
1NJN|1|0|U|2869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains