J11_1NJO_001

3D structure

PDB id

_1NJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAGGG*CUUACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

64 nucleotides

Bulged bases

1NJO|1|0|C|537, 1NJO|1|0|C|541, 1NJO|1|0|A|542, 1NJO|1|0|U|571, 1NJO|1|0|U|2004, 1NJO|1|0|A|2770, 1NJO|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJO|1|0|A|8
1NJO|1|0|U|9
1NJO|1|0|A|10
1NJO|1|0|G|11
1NJO|1|0|U|12
1NJO|1|0|A|13
1NJO|1|0|A|14
1NJO|1|0|G|15
1NJO|1|0|G|16
1NJO|1|0|G|17
*
1NJO|1|0|C|533
1NJO|1|0|U|534
1NJO|1|0|U|535
1NJO|1|0|A|536
1NJO|1|0|C|537
1NJO|1|0|A|538
1NJO|1|0|A|539
1NJO|1|0|G|540
1NJO|1|0|C|541
1NJO|1|0|A|542
1NJO|1|0|G|543
*
1NJO|1|0|C|569
1NJO|1|0|G|570
1NJO|1|0|U|571
1NJO|1|0|G|572
1NJO|1|0|C|573
*
1NJO|1|0|G|586
1NJO|1|0|A|587
1NJO|1|0|G|588
*
1NJO|1|0|C|1274
1NJO|1|0|A|1275
*
1NJO|1|0|U|2000
1NJO|1|0|G|2001
1NJO|1|0|A|2002
1NJO|1|0|A|2003
1NJO|1|0|U|2004
1NJO|1|0|U|2005
1NJO|1|0|G|2006
*
1NJO|1|0|C|2023
1NJO|1|0|U|2024
1NJO|1|0|A|2025
1NJO|1|0|C|2026
*
1NJO|1|0|G|2604
1NJO|1|0|C|2605
1NJO|1|0|G|2606
1NJO|1|0|C|2607
1NJO|1|0|A|2608
1NJO|1|0|G|2609
*
1NJO|1|0|C|2768
1NJO|1|0|C|2769
1NJO|1|0|A|2770
1NJO|1|0|C|2771
*
1NJO|1|0|G|2781
1NJO|1|0|G|2782
1NJO|1|0|U|2783
1NJO|1|0|A|2784
1NJO|1|0|A|2785
1NJO|1|0|G|2786
*
1NJO|1|0|C|2864
1NJO|1|0|G|2865
1NJO|1|0|A|2866
1NJO|1|0|G|2867
1NJO|1|0|G|2868
1NJO|1|0|U|2869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains