J11_1NJP_001

3D structure

PDB id

_1NJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAGGG*CUUACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

64 nucleotides

Bulged bases

1NJP|1|0|C|537, 1NJP|1|0|G|540, 1NJP|1|0|C|541, 1NJP|1|0|A|542, 1NJP|1|0|U|571, 1NJP|1|0|U|2004, 1NJP|1|0|A|2770, 1NJP|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|A|8
1NJP|1|0|U|9
1NJP|1|0|A|10
1NJP|1|0|G|11
1NJP|1|0|U|12
1NJP|1|0|A|13
1NJP|1|0|A|14
1NJP|1|0|G|15
1NJP|1|0|G|16
1NJP|1|0|G|17
*
1NJP|1|0|C|533
1NJP|1|0|U|534
1NJP|1|0|U|535
1NJP|1|0|A|536
1NJP|1|0|C|537
1NJP|1|0|A|538
1NJP|1|0|A|539
1NJP|1|0|G|540
1NJP|1|0|C|541
1NJP|1|0|A|542
1NJP|1|0|G|543
*
1NJP|1|0|C|569
1NJP|1|0|G|570
1NJP|1|0|U|571
1NJP|1|0|G|572
1NJP|1|0|C|573
*
1NJP|1|0|G|586
1NJP|1|0|A|587
1NJP|1|0|G|588
*
1NJP|1|0|C|1274
1NJP|1|0|A|1275
*
1NJP|1|0|U|2000
1NJP|1|0|G|2001
1NJP|1|0|A|2002
1NJP|1|0|A|2003
1NJP|1|0|U|2004
1NJP|1|0|U|2005
1NJP|1|0|G|2006
*
1NJP|1|0|C|2023
1NJP|1|0|U|2024
1NJP|1|0|A|2025
1NJP|1|0|C|2026
*
1NJP|1|0|G|2604
1NJP|1|0|C|2605
1NJP|1|0|G|2606
1NJP|1|0|C|2607
1NJP|1|0|A|2608
1NJP|1|0|G|2609
*
1NJP|1|0|C|2768
1NJP|1|0|C|2769
1NJP|1|0|A|2770
1NJP|1|0|C|2771
*
1NJP|1|0|G|2781
1NJP|1|0|G|2782
1NJP|1|0|U|2783
1NJP|1|0|A|2784
1NJP|1|0|A|2785
1NJP|1|0|G|2786
*
1NJP|1|0|C|2864
1NJP|1|0|G|2865
1NJP|1|0|A|2866
1NJP|1|0|G|2867
1NJP|1|0|G|2868
1NJP|1|0|U|2869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains