J11_1NKW_002

3D structure

PDB id

_1NK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAGG*UUACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

62 nucleotides

Bulged bases

1NKW|1|0|C|537, 1NKW|1|0|G|540, 1NKW|1|0|U|571, 1NKW|1|0|U|2004, 1NKW|1|0|A|2770, 1NKW|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NKW|1|0|A|8
1NKW|1|0|U|9
1NKW|1|0|A|10
1NKW|1|0|G|11
1NKW|1|0|U|12
1NKW|1|0|A|13
1NKW|1|0|A|14
1NKW|1|0|G|15
1NKW|1|0|G|16
*
1NKW|1|0|U|534
1NKW|1|0|U|535
1NKW|1|0|A|536
1NKW|1|0|C|537
1NKW|1|0|A|538
1NKW|1|0|A|539
1NKW|1|0|G|540
1NKW|1|0|C|541
1NKW|1|0|A|542
1NKW|1|0|G|543
*
1NKW|1|0|C|569
1NKW|1|0|G|570
1NKW|1|0|U|571
1NKW|1|0|G|572
1NKW|1|0|C|573
*
1NKW|1|0|G|586
1NKW|1|0|A|587
1NKW|1|0|G|588
*
1NKW|1|0|C|1274
1NKW|1|0|A|1275
*
1NKW|1|0|U|2000
1NKW|1|0|G|2001
1NKW|1|0|A|2002
1NKW|1|0|A|2003
1NKW|1|0|U|2004
1NKW|1|0|U|2005
1NKW|1|0|G|2006
*
1NKW|1|0|C|2023
1NKW|1|0|U|2024
1NKW|1|0|A|2025
1NKW|1|0|C|2026
*
1NKW|1|0|G|2604
1NKW|1|0|C|2605
1NKW|1|0|G|2606
1NKW|1|0|C|2607
1NKW|1|0|A|2608
1NKW|1|0|G|2609
*
1NKW|1|0|C|2768
1NKW|1|0|C|2769
1NKW|1|0|A|2770
1NKW|1|0|C|2771
*
1NKW|1|0|G|2781
1NKW|1|0|G|2782
1NKW|1|0|U|2783
1NKW|1|0|A|2784
1NKW|1|0|A|2785
1NKW|1|0|G|2786
*
1NKW|1|0|C|2864
1NKW|1|0|G|2865
1NKW|1|0|A|2866
1NKW|1|0|G|2867
1NKW|1|0|G|2868
1NKW|1|0|U|2869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20

Chain P

50S ribosomal protein L21

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32