J11_1OND_001

3D structure

PDB id

_1ON (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

GAUAGUAAGGG*CUUACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGUC

Length

66 nucleotides

Bulged bases

1OND|1|0|C|537, 1OND|1|0|G|540, 1OND|1|0|U|571, 1OND|1|0|U|2004, 1OND|1|0|A|2770, 1OND|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|G|7
1OND|1|0|A|8
1OND|1|0|U|9
1OND|1|0|A|10
1OND|1|0|G|11
1OND|1|0|U|12
1OND|1|0|A|13
1OND|1|0|A|14
1OND|1|0|G|15
1OND|1|0|G|16
1OND|1|0|G|17
*
1OND|1|0|C|533
1OND|1|0|U|534
1OND|1|0|U|535
1OND|1|0|A|536
1OND|1|0|C|537
1OND|1|0|A|538
1OND|1|0|A|539
1OND|1|0|G|540
1OND|1|0|C|541
1OND|1|0|A|542
1OND|1|0|G|543
*
1OND|1|0|C|569
1OND|1|0|G|570
1OND|1|0|U|571
1OND|1|0|G|572
1OND|1|0|C|573
*
1OND|1|0|G|586
1OND|1|0|A|587
1OND|1|0|G|588
*
1OND|1|0|C|1274
1OND|1|0|A|1275
*
1OND|1|0|U|2000
1OND|1|0|G|2001
1OND|1|0|A|2002
1OND|1|0|A|2003
1OND|1|0|U|2004
1OND|1|0|U|2005
1OND|1|0|G|2006
*
1OND|1|0|C|2023
1OND|1|0|U|2024
1OND|1|0|A|2025
1OND|1|0|C|2026
*
1OND|1|0|G|2604
1OND|1|0|C|2605
1OND|1|0|G|2606
1OND|1|0|C|2607
1OND|1|0|A|2608
1OND|1|0|G|2609
*
1OND|1|0|C|2768
1OND|1|0|C|2769
1OND|1|0|A|2770
1OND|1|0|C|2771
*
1OND|1|0|G|2781
1OND|1|0|G|2782
1OND|1|0|U|2783
1OND|1|0|A|2784
1OND|1|0|A|2785
1OND|1|0|G|2786
*
1OND|1|0|C|2864
1OND|1|0|G|2865
1OND|1|0|A|2866
1OND|1|0|G|2867
1OND|1|0|G|2868
1OND|1|0|U|2869
1OND|1|0|C|2870

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32