J11_1SM1_002

3D structure

PDB id

_1SM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAGG*UUACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

62 nucleotides

Bulged bases

1SM1|1|0|C|537, 1SM1|1|0|C|541, 1SM1|1|0|A|542, 1SM1|1|0|U|571, 1SM1|1|0|U|2004, 1SM1|1|0|U|2005, 1SM1|1|0|C|2769, 1SM1|1|0|A|2770, 1SM1|1|0|U|2783, 1SM1|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|A|8
1SM1|1|0|U|9
1SM1|1|0|A|10
1SM1|1|0|G|11
1SM1|1|0|U|12
1SM1|1|0|A|13
1SM1|1|0|A|14
1SM1|1|0|G|15
1SM1|1|0|G|16
*
1SM1|1|0|U|534
1SM1|1|0|U|535
1SM1|1|0|A|536
1SM1|1|0|C|537
1SM1|1|0|A|538
1SM1|1|0|A|539
1SM1|1|0|G|540
1SM1|1|0|C|541
1SM1|1|0|A|542
1SM1|1|0|G|543
*
1SM1|1|0|C|569
1SM1|1|0|G|570
1SM1|1|0|U|571
1SM1|1|0|G|572
1SM1|1|0|C|573
*
1SM1|1|0|G|586
1SM1|1|0|A|587
1SM1|1|0|G|588
*
1SM1|1|0|C|1274
1SM1|1|0|A|1275
*
1SM1|1|0|U|2000
1SM1|1|0|G|2001
1SM1|1|0|A|2002
1SM1|1|0|A|2003
1SM1|1|0|U|2004
1SM1|1|0|U|2005
1SM1|1|0|G|2006
*
1SM1|1|0|C|2023
1SM1|1|0|U|2024
1SM1|1|0|A|2025
1SM1|1|0|C|2026
*
1SM1|1|0|G|2604
1SM1|1|0|C|2605
1SM1|1|0|G|2606
1SM1|1|0|C|2607
1SM1|1|0|A|2608
1SM1|1|0|G|2609
*
1SM1|1|0|C|2768
1SM1|1|0|C|2769
1SM1|1|0|A|2770
1SM1|1|0|C|2771
*
1SM1|1|0|G|2781
1SM1|1|0|G|2782
1SM1|1|0|U|2783
1SM1|1|0|A|2784
1SM1|1|0|A|2785
1SM1|1|0|G|2786
*
1SM1|1|0|C|2864
1SM1|1|0|G|2865
1SM1|1|0|A|2866
1SM1|1|0|G|2867
1SM1|1|0|G|2868
1SM1|1|0|U|2869

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain C

50S RIBOSOMAL PROTEIN L4

Chain H

50S RIBOSOMAL PROTEIN L13

Chain O

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L21

Chain Q

50S RIBOSOMAL PROTEIN L22

Chain Z

50S RIBOSOMAL PROTEIN L32