J11_2D3O_001

3D structure

PDB id

_2D3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAG*UACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

60 nucleotides

Bulged bases

2D3O|1|0|C|537, 2D3O|1|0|C|541, 2D3O|1|0|U|571, 2D3O|1|0|U|2004, 2D3O|1|0|C|2769, 2D3O|1|0|A|2770, 2D3O|1|0|G|2868

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2D3O|1|0|A|8
2D3O|1|0|U|9
2D3O|1|0|A|10
2D3O|1|0|G|11
2D3O|1|0|U|12
2D3O|1|0|A|13
2D3O|1|0|A|14
2D3O|1|0|G|15
*
2D3O|1|0|U|535
2D3O|1|0|A|536
2D3O|1|0|C|537
2D3O|1|0|A|538
2D3O|1|0|A|539
2D3O|1|0|G|540
2D3O|1|0|C|541
2D3O|1|0|A|542
2D3O|1|0|G|543
*
2D3O|1|0|C|569
2D3O|1|0|G|570
2D3O|1|0|U|571
2D3O|1|0|G|572
2D3O|1|0|C|573
*
2D3O|1|0|G|586
2D3O|1|0|A|587
2D3O|1|0|G|588
*
2D3O|1|0|C|1274
2D3O|1|0|A|1275
*
2D3O|1|0|U|2000
2D3O|1|0|G|2001
2D3O|1|0|A|2002
2D3O|1|0|A|2003
2D3O|1|0|U|2004
2D3O|1|0|U|2005
2D3O|1|0|G|2006
*
2D3O|1|0|C|2023
2D3O|1|0|U|2024
2D3O|1|0|A|2025
2D3O|1|0|C|2026
*
2D3O|1|0|G|2604
2D3O|1|0|C|2605
2D3O|1|0|G|2606
2D3O|1|0|C|2607
2D3O|1|0|A|2608
2D3O|1|0|G|2609
*
2D3O|1|0|C|2768
2D3O|1|0|C|2769
2D3O|1|0|A|2770
2D3O|1|0|C|2771
*
2D3O|1|0|G|2781
2D3O|1|0|G|2782
2D3O|1|0|U|2783
2D3O|1|0|A|2784
2D3O|1|0|A|2785
2D3O|1|0|G|2786
*
2D3O|1|0|C|2864
2D3O|1|0|G|2865
2D3O|1|0|A|2866
2D3O|1|0|G|2867
2D3O|1|0|G|2868
2D3O|1|0|U|2869

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains