J11_2OGO_001

3D structure

PDB id

_2OG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Experimental method

Resolution

Loop

Sequence

AUAGUAAG*UACAAGCAG*CGUGC*GAG*CA*UGAAUUG*CUAC*GCGCAG*CCAC*GGUAAG*CGAGGU

Length

60 nucleotides

Bulged bases

2OGO|1|0|C|537, 2OGO|1|0|G|540, 2OGO|1|0|A|542, 2OGO|1|0|U|571, 2OGO|1|0|U|2004, 2OGO|1|0|A|2770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|A|8
2OGO|1|0|U|9
2OGO|1|0|A|10
2OGO|1|0|G|11
2OGO|1|0|U|12
2OGO|1|0|A|13
2OGO|1|0|A|14
2OGO|1|0|G|15
*
2OGO|1|0|U|535
2OGO|1|0|A|536
2OGO|1|0|C|537
2OGO|1|0|A|538
2OGO|1|0|A|539
2OGO|1|0|G|540
2OGO|1|0|C|541
2OGO|1|0|A|542
2OGO|1|0|G|543
*
2OGO|1|0|C|569
2OGO|1|0|G|570
2OGO|1|0|U|571
2OGO|1|0|G|572
2OGO|1|0|C|573
*
2OGO|1|0|G|586
2OGO|1|0|A|587
2OGO|1|0|G|588
*
2OGO|1|0|C|1274
2OGO|1|0|A|1275
*
2OGO|1|0|U|2000
2OGO|1|0|G|2001
2OGO|1|0|A|2002
2OGO|1|0|A|2003
2OGO|1|0|U|2004
2OGO|1|0|U|2005
2OGO|1|0|G|2006
*
2OGO|1|0|C|2023
2OGO|1|0|U|2024
2OGO|1|0|A|2025
2OGO|1|0|C|2026
*
2OGO|1|0|G|2604
2OGO|1|0|C|2605
2OGO|1|0|G|2606
2OGO|1|0|C|2607
2OGO|1|0|A|2608
2OGO|1|0|G|2609
*
2OGO|1|0|C|2768
2OGO|1|0|C|2769
2OGO|1|0|A|2770
2OGO|1|0|C|2771
*
2OGO|1|0|G|2781
2OGO|1|0|G|2782
2OGO|1|0|U|2783
2OGO|1|0|A|2784
2OGO|1|0|A|2785
2OGO|1|0|G|2786
*
2OGO|1|0|C|2864
2OGO|1|0|G|2865
2OGO|1|0|A|2866
2OGO|1|0|G|2867
2OGO|1|0|G|2868
2OGO|1|0|U|2869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3