J11_4V4P_001
3D structure
- PDB id
- _4V4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Experimental method
- Resolution
Loop
- Sequence
- AUGGUAAGGG*CUUACAAGCAGU*GCGUGCCUAUUGAAGCAUGAG*CAUGAGUAACGAUAAA*UC*GCGC*GGUGAAAUUGAACUGG*CCUAC*GCGCAG*CCACGGCGUCAAGCCGGUAAG*CGAGGU
- Length
- 119 nucleotides
- Bulged bases
- 4V4P|1|AA|C|527, 4V4P|1|AA|A|528, 4V4P|1|AA|U|562, 4V4P|1|AA|C|574, 4V4P|1|AA|A|1265, 4V4P|1|AA|U|1267, 4V4P|1|AA|G|1271, 4V4P|1|AA|A|1272, 4V4P|1|AA|U|1273, 4V4P|1|AA|A|1274, 4V4P|1|AA|A|1275, 4V4P|1|AA|C|1646, 4V4P|1|AA|G|1647, 4V4P|1|AA|G|2795, 4V4P|1|AA|U|2797, 4V4P|1|AA|A|2809, 4V4P|1|AA|A|2810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4P|1|AA|A|8
4V4P|1|AA|U|9
4V4P|1|AA|G|10
4V4P|1|AA|G|11
4V4P|1|AA|U|12
4V4P|1|AA|A|13
4V4P|1|AA|A|14
4V4P|1|AA|G|15
4V4P|1|AA|G|16
4V4P|1|AA|G|17
*
4V4P|1|AA|C|523
4V4P|1|AA|U|524
4V4P|1|AA|U|525
4V4P|1|AA|A|526
4V4P|1|AA|C|527
4V4P|1|AA|A|528
4V4P|1|AA|A|529
4V4P|1|AA|G|530
4V4P|1|AA|C|531
4V4P|1|AA|A|532
4V4P|1|AA|G|533
4V4P|1|AA|U|534
*
4V4P|1|AA|G|559
4V4P|1|AA|C|560
4V4P|1|AA|G|561
4V4P|1|AA|U|562
4V4P|1|AA|G|563
4V4P|1|AA|C|564
4V4P|1|AA|C|565
4V4P|1|AA|U|566
4V4P|1|AA|A|567
4V4P|1|AA|U|568
4V4P|1|AA|U|569
4V4P|1|AA|G|570
4V4P|1|AA|A|571
4V4P|1|AA|A|572
4V4P|1|AA|G|573
4V4P|1|AA|C|574
4V4P|1|AA|A|575
4V4P|1|AA|U|576
4V4P|1|AA|G|577
4V4P|1|AA|A|578
4V4P|1|AA|G|579
*
4V4P|1|AA|C|1261
4V4P|1|AA|A|1262
4V4P|1|AA|U|1263
4V4P|1|AA|G|1264
4V4P|1|AA|A|1265
4V4P|1|AA|G|1266
4V4P|1|AA|U|1267
4V4P|1|AA|A|1268
4V4P|1|AA|A|1269
4V4P|1|AA|C|1270
4V4P|1|AA|G|1271
4V4P|1|AA|A|1272
4V4P|1|AA|U|1273
4V4P|1|AA|A|1274
4V4P|1|AA|A|1275
4V4P|1|AA|A|1276
*
4V4P|1|AA|U|1294
4V4P|1|AA|C|1295
*
4V4P|1|AA|G|1645
4V4P|1|AA|C|1646
4V4P|1|AA|G|1647
4V4P|1|AA|C|1648
*
4V4P|1|AA|G|2009
4V4P|1|AA|G|2010
4V4P|1|AA|U|2011
4V4P|1|AA|G|2012
4V4P|1|AA|A|2013
4V4P|1|AA|A|2014
4V4P|1|AA|A|2015
4V4P|1|AA|U|2016
4V4P|1|AA|U|2017
4V4P|1|AA|G|2018
4V4P|1|AA|A|2019
4V4P|1|AA|A|2020
4V4P|1|AA|C|2021
4V4P|1|AA|U|2022
4V4P|1|AA|G|2023
4V4P|1|AA|G|2024
*
4V4P|1|AA|C|2039
4V4P|1|AA|C|2040
4V4P|1|AA|U|2041
4V4P|1|AA|A|2042
4V4P|1|AA|C|2043
*
4V4P|1|AA|G|2625
4V4P|1|AA|C|2626
4V4P|1|AA|G|2627
4V4P|1|AA|C|2628
4V4P|1|AA|A|2629
4V4P|1|AA|G|2630
*
4V4P|1|AA|C|2788
4V4P|1|AA|C|2789
4V4P|1|AA|A|2790
4V4P|1|AA|C|2791
4V4P|1|AA|G|2792
4V4P|1|AA|G|2793
4V4P|1|AA|C|2794
4V4P|1|AA|G|2795
4V4P|1|AA|U|2797
4V4P|1|AA|C|2798
4V4P|1|AA|A|2799
4V4P|1|AA|A|2801
4V4P|1|AA|G|2802
4V4P|1|AA|C|2803
4V4P|1|AA|C|2804
4V4P|1|AA|G|2805
4V4P|1|AA|G|2807
4V4P|1|AA|U|2808
4V4P|1|AA|A|2809
4V4P|1|AA|A|2810
4V4P|1|AA|G|2811
*
4V4P|1|AA|C|2889
4V4P|1|AA|G|2891
4V4P|1|AA|A|2892
4V4P|1|AA|G|2893
4V4P|1|AA|G|2894
4V4P|1|AA|U|2895
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain A0
- 50S ribosomal protein L17
- Chain A1
- 50S ribosomal protein L20
- Chain A2
- 50S ribosomal protein L21
- Chain A5
- 50S ribosomal protein L32
- Chain AE
- 50S ribosomal protein L3
- Chain AF
- 50S ribosomal protein L4
- Chain AM
- 50S ribosomal protein L13
- Chain AS
- 50S ribosomal protein L22
Coloring options: