J11_4V4R_001
3D structure
- PDB id
- _4V4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Experimental method
- Resolution
Loop
- Sequence
- AUGGUAAG*UACAAGCAG*CGUGC*GAG*CAUGAGUAA*UGAAAUUGAACUG*CUAC*GCGCAGG*CCCACG*CCGGUAAG*CGAGGU
- Length
- 78 nucleotides
- Bulged bases
- 4V4R|1|BA|C|527, 4V4R|1|BA|A|528, 4V4R|1|BA|C|531, 4V4R|1|BA|A|532, 4V4R|1|BA|U|562, 4V4R|1|BA|A|2015, 4V4R|1|BA|A|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V4R|1|BA|A|8
4V4R|1|BA|U|9
4V4R|1|BA|G|10
4V4R|1|BA|G|11
4V4R|1|BA|U|12
4V4R|1|BA|A|13
4V4R|1|BA|A|14
4V4R|1|BA|G|15
*
4V4R|1|BA|U|525
4V4R|1|BA|A|526
4V4R|1|BA|C|527
4V4R|1|BA|A|528
4V4R|1|BA|A|529
4V4R|1|BA|G|530
4V4R|1|BA|C|531
4V4R|1|BA|A|532
4V4R|1|BA|G|533
*
4V4R|1|BA|C|560
4V4R|1|BA|G|561
4V4R|1|BA|U|562
4V4R|1|BA|G|563
4V4R|1|BA|C|564
*
4V4R|1|BA|G|577
4V4R|1|BA|A|578
4V4R|1|BA|G|579
*
4V4R|1|BA|C|1261
4V4R|1|BA|A|1262
4V4R|1|BA|U|1263
4V4R|1|BA|G|1264
4V4R|1|BA|A|1265
4V4R|1|BA|G|1266
4V4R|1|BA|U|1267
4V4R|1|BA|A|1268
4V4R|1|BA|A|1269
*
4V4R|1|BA|U|2011
4V4R|1|BA|G|2012
4V4R|1|BA|A|2013
4V4R|1|BA|A|2014
4V4R|1|BA|A|2015
4V4R|1|BA|U|2016
4V4R|1|BA|U|2017
4V4R|1|BA|G|2018
4V4R|1|BA|A|2019
4V4R|1|BA|A|2020
4V4R|1|BA|C|2021
4V4R|1|BA|U|2022
4V4R|1|BA|G|2023
*
4V4R|1|BA|C|2040
4V4R|1|BA|U|2041
4V4R|1|BA|A|2042
4V4R|1|BA|C|2043
*
4V4R|1|BA|G|2625
4V4R|1|BA|C|2626
4V4R|1|BA|G|2627
4V4R|1|BA|C|2628
4V4R|1|BA|A|2629
4V4R|1|BA|G|2630
4V4R|1|BA|G|2631
*
4V4R|1|BA|C|2787
4V4R|1|BA|C|2788
4V4R|1|BA|C|2789
4V4R|1|BA|A|2790
4V4R|1|BA|C|2791
4V4R|1|BA|G|2792
*
4V4R|1|BA|C|2803
4V4R|1|BA|C|2804
4V4R|1|BA|G|2805
4V4R|1|BA|G|2807
4V4R|1|BA|U|2808
4V4R|1|BA|A|2809
4V4R|1|BA|A|2810
4V4R|1|BA|G|2811
*
4V4R|1|BA|C|2889
4V4R|1|BA|G|2891
4V4R|1|BA|A|2892
4V4R|1|BA|G|2893
4V4R|1|BA|G|2894
4V4R|1|BA|U|2895
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BF
- 50S ribosomal protein L4
- Chain BN
- 50S ribosomal protein L13
- Chain BR
- 50S ribosomal protein L17
- Chain BU
- 50S ribosomal protein L20
- Chain BV
- 50S ribosomal protein L21
- Chain BW
- 50S ribosomal protein L22
Coloring options: